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SharePoint 2013 permission issue

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I am having real strange permission issue in sharepoint. When i create web application in classic mode and attach content dbs , everything works fine. AFter that i migrate web application to claims based using Convert-SPWebApplication -Identity "http://" -To Claims –RetainPermissions -Force 

And set super user and reader account using

$webApp = Get-SPWebApplication "http://sharedev.dhs.wi.gov"
$webApp.Properties["portalsuperuseraccount"] = "i:0#.w|"
$webApp.Properties["portalsuperreaderaccount"] = "i:0#.w|"
$webApp.Update()

Everything works fine for for 5 minutes. All permissions work everywhere. After 5 minutes i start getting this site is not shared with you in all shared document libraries , lists and subsite while i can access the site itself without no problem in home page. Has anyone faced this issue?


sachin


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